| aaaq |
Amino acid group additivity |
| aaaq10 |
Amino acid group additivity |
| aaaq13 |
Amino acid group additivity |
| aaaq4 |
Amino acid group additivity |
| addexif |
Some utilities for the package |
| add_Co_aqueous |
Carrollite stability |
| aoscp |
Average oxidation state of carbon in proteins |
| aoscp1 |
Average oxidation state of carbon in proteins |
| aoscp2 |
Average oxidation state of carbon in proteins |
| aoscp3 |
Average oxidation state of carbon in proteins |
| aoscp4 |
Average oxidation state of carbon in proteins |
| aoscp5 |
Average oxidation state of carbon in proteins |
| aoscp6 |
Average oxidation state of carbon in proteins |
| bison |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison1 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison2 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison3 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison4 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison5 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison6 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison7 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| bison8 |
Relative stabilities of proteins inferred from a hot-spring metagenome |
| calc_affinity |
Energy release during protein synthesis at ultramafic-hosted hydrothermal systems |
| calc_carrollite |
Carrollite stability |
| calc_logaH2_intermediate |
Using thermodynamics to obtain geochemical information from genomes |
| canH2O |
Water as a reactant in the differential expression of proteins in cancer |
| canH2O1 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2O2 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2O3 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2O4 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2O5 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2OS1 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2OS2 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2OT1 |
Water as a reactant in the differential expression of proteins in cancer |
| canH2OT2 |
Water as a reactant in the differential expression of proteins in cancer |
| canprot |
Functions for processing differential expression datasets |
| carrollite |
Carrollite stability |
| carrollite_5 |
Carrollite stability |
| carrollite_8 |
Carrollite stability |
| carrollite_S3 |
Carrollite stability |
| carrollite_S4 |
Carrollite stability |
| carrollite_S5 |
Carrollite stability |
| carrollite_S6 |
Carrollite stability |
| check_IDs |
Functions for processing differential expression datasets |
| chem16S |
Community-level chemical metrics |
| chem16S_1 |
Community-level chemical metrics |
| chnosz10 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz101 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz104 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz105 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz106 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz107 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S1 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S10 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S2 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S3 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S5 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S6A |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S6B |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S7 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S8 |
Thermodynamic calculations and diagrams for geochemistry |
| chnosz10S9 |
Thermodynamic calculations and diagrams for geochemistry |
| cleanup |
Functions for processing differential expression datasets |
| cpcp |
Chemical portraits of cancer proteomes |
| Ehplot |
Chemical portraits of cancer proteomes |
| evdevH2O |
Water activity and redox potential in evolution and development |
| evdevH2O1 |
Water activity and redox potential in evolution and development |
| evdevH2O2 |
Water activity and redox potential in evolution and development |
| evdevH2O3 |
Water activity and redox potential in evolution and development |
| evdevH2O4 |
Water activity and redox potential in evolution and development |
| evdevH2O5 |
Water activity and redox potential in evolution and development |
| evdevH2O6 |
Water activity and redox potential in evolution and development |
| evdevH2O7 |
Water activity and redox potential in evolution and development |
| evdevH2O8 |
Water activity and redox potential in evolution and development |
| geo16S |
Chemical links between redox conditions and community reference proteomes |
| geo16S1 |
Chemical links between redox conditions and community reference proteomes |
| geo16S2 |
Chemical links between redox conditions and community reference proteomes |
| geo16S3 |
Chemical links between redox conditions and community reference proteomes |
| geo16S4 |
Chemical links between redox conditions and community reference proteomes |
| geo16S5 |
Chemical links between redox conditions and community reference proteomes |
| geo16S_S1 |
Chemical links between redox conditions and community reference proteomes |
| geo16S_S2 |
Chemical links between redox conditions and community reference proteomes |
| geo16S_S3 |
Chemical links between redox conditions and community reference proteomes |
| geo16S_S4 |
Chemical links between redox conditions and community reference proteomes |
| geo16S_S5 |
Chemical links between redox conditions and community reference proteomes |
| geo16S_S6 |
Chemical links between redox conditions and community reference proteomes |
| getCBS17 |
Data from developmental proteomics studies |
| getFOK21 |
Data from developmental proteomics studies |
| getmdat_geo16S |
Chemical links between redox conditions and community reference proteomes |
| getmdat_orp16S |
Influence of redox potential on bacterial protein evolution |
| getmetrics_geo16S |
Chemical links between redox conditions and community reference proteomes |
| getmetrics_orp16S |
Influence of redox potential on bacterial protein evolution |
| getphyloaa |
Calculate optimal logaH2O and logfO2 for target proteins |
| get_colors |
Chemical portraits of cancer proteomes |
| get_comptab |
Functions for processing differential expression datasets |
| gradH2O |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O0 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O1 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O2 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O3 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O4 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O5 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O6 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradH2O7 |
Signatures of salinity gradients in the chemical composition of proteins |
| gradox |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| gradox1 |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| gradox2 |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| gradox3 |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| gradox4 |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| gradox5 |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| gradoxS1 |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| gradoxS2 |
Carbon oxidation state of proteins inferred from metagenomes in redox gradients |
| grad_mplot |
Plotting functions for chemical composition of metagenomes |
| groupplots |
Chemical portraits of cancer proteomes |
| MaximAct |
Calculate optimal logaH2O and logfO2 for target proteins |
| mcomp |
Plotting functions for chemical composition of metagenomes |
| mergedplot |
Chemical portraits of cancer proteomes |
| microhum |
Adaptations of microbial genomes to human body chemistry |
| microhum_1 |
Adaptations of microbial genomes to human body chemistry |
| microhum_1_1 |
Adaptations of microbial genomes to human body chemistry |
| microhum_2 |
Adaptations of microbial genomes to human body chemistry |
| microhum_3 |
Adaptations of microbial genomes to human body chemistry |
| microhum_3_1 |
Adaptations of microbial genomes to human body chemistry |
| microhum_4 |
Adaptations of microbial genomes to human body chemistry |
| microhum_5 |
Adaptations of microbial genomes to human body chemistry |
| microhum_5_1 |
Adaptations of microbial genomes to human body chemistry |
| microhum_6 |
Adaptations of microbial genomes to human body chemistry |
| microhum_6_1 |
Adaptations of microbial genomes to human body chemistry |
| mjenergy |
Energy release during protein synthesis at ultramafic-hosted hydrothermal systems |
| mjenergy1 |
Energy release during protein synthesis at ultramafic-hosted hydrothermal systems |
| mjenergy2 |
Energy release during protein synthesis at ultramafic-hosted hydrothermal systems |
| mjenergy3 |
Energy release during protein synthesis at ultramafic-hosted hydrothermal systems |
| mjenergy_Dataset_S1 |
Energy release during protein synthesis at ultramafic-hosted hydrothermal systems |
| mjenergy_Table_S3 |
Energy release during protein synthesis at ultramafic-hosted hydrothermal systems |
| mkvig |
Functions for processing differential expression datasets |
| mpage |
Plotting functions for chemical composition of metagenomes |
| mplot |
Plotting functions for chemical composition of metagenomes |
| orp16S |
Influence of redox potential on bacterial protein evolution |
| orp16S_1 |
Influence of redox potential on bacterial protein evolution |
| orp16S_2 |
Influence of redox potential on bacterial protein evolution |
| orp16S_3 |
Influence of redox potential on bacterial protein evolution |
| orp16S_4 |
Influence of redox potential on bacterial protein evolution |
| orp16S_5 |
Influence of redox potential on bacterial protein evolution |
| orp16S_6 |
Influence of redox potential on bacterial protein evolution |
| orp16S_D3 |
Influence of redox potential on bacterial protein evolution |
| orp16S_info |
Influence of redox potential on bacterial protein evolution |
| orp16S_S1 |
Influence of redox potential on bacterial protein evolution |
| orp16S_S2 |
Influence of redox potential on bacterial protein evolution |
| orp16S_T1 |
Influence of redox potential on bacterial protein evolution |
| orp16S_util |
Plotting functions for orp16S paper |
| utils |
Some utilities for the package |
| utogig |
Using thermodynamics to obtain geochemical information from genomes |
| utogig1 |
Using thermodynamics to obtain geochemical information from genomes |
| utogig2 |
Using thermodynamics to obtain geochemical information from genomes |
| utogig3 |
Using thermodynamics to obtain geochemical information from genomes |
| utogig4 |
Using thermodynamics to obtain geochemical information from genomes |
| utogigS1 |
Using thermodynamics to obtain geochemical information from genomes |
| utogigS2 |
Using thermodynamics to obtain geochemical information from genomes |
| utogigS4 |
Using thermodynamics to obtain geochemical information from genomes |
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