canH2O {JMDplots}

R Documentation

Water as a reactant in the differential expression of proteins in cancer

Description

Plots from the paper by Dick (2020). Function names ending with ‘⁠T*⁠’ and ‘⁠S*⁠’ refer to supplementary tables and figures.

Usage

  canH2O1(pdf = FALSE)
  canH2O2(pdf = FALSE)
  canH2O3(pdf = FALSE)
  canH2O4(pdf = FALSE)
  canH2OT1()
  canH2OT2()
  canH2OS1(pdf = FALSE)
  canH2OS2(pdf = FALSE)

Arguments

pdf	logical, make a PDF file?

Details

This table gives a brief description of each function.

canH2O1	Study overview
canH2O2	Median differences of nH2O and ZC for cell culture and cancer tissue
canH2O3	nH2O-ZC plots for TCGA and HPA datasets
canH2O4	Differentially expressed genes in aneuploid and osmotically shocked yeast cells
canH2OT1	Stoichiometric matrix for amino acids with QEC basis species
canH2OT2	Mean differences and p-values for all datasets in each condition
canH2OS1	nO2-ZC and nH2O-ZC correlations using QEC basis species
canH2OS2	HPA-TCGA scatterplots for ZC and nH2O

Acknowledgements

The results shown here are in part based upon data generated by the TCGA Research Network (https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga) and Human Protein Atlas (https://www.proteinatlas.org/).

References

Dick JM (2021) Water as a reactant in the differential expression of proteins in cancer. Comp. Sys. Onco. 1:e1007. doi:10.1002/cso2.1007

Examples

canH2O1()

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