| chem16S-package |
Chemical metrics for microbial communities |
| chem16S |
Chemical metrics for microbial communities |
| chemlab |
Formatted labels for chemical metrics |
| get_metadata |
Template function for metadata |
| get_metrics |
Calculate chemical metrics of community reference proteomes |
| get_metric_byrank |
Calculate chemical metric for taxa in each sample aggregated to a specified rank |
| map_taxa |
Map taxonomic names to NCBI or GTDB taxonomy |
| mouse.GTDB_214 |
'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial |
| mouse.RDP |
'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial |
| mouse.silva |
'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial |
| physeq |
Process 'phyloseq-class' objects to calculate chemical metrics |
| plot_metrics |
Plot chemical metrics of community reference proteomes |
| plot_ps_metrics |
Process 'phyloseq-class' objects to calculate chemical metrics |
| plot_ps_metrics2 |
Process 'phyloseq-class' objects to calculate chemical metrics |
| ps_metrics |
Process 'phyloseq-class' objects to calculate chemical metrics |
| ps_taxacounts |
Process 'phyloseq-class' objects to calculate chemical metrics |
| read_RDP |
Read and filter RDP Classifier output |
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